R/tntTracks.R
, R/tntBoard.R
, R/tntTracks-compositeTrack.R
seqinfo.Rd
Seqinfo of TnTTrack and TnTBoard
# S4 method for RangeBasedTrack seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value # S4 method for RangeBasedTrack seqinfo(x) # S4 method for RangeBasedTrack seqlevelsInUse(x) # S4 method for TnTBoard seqinfo(x) # S4 method for CompositeTrack seqinfo(x) # S4 method for CompositeTrack seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value # S4 method for CompositeTrack seqlevelsInUse(x)
x | A TnTTrack or TnTBoard object. |
---|---|
new2old, pruning.mode, value | Passed to seqinfo method for GenomicRanges. |
seqinfo
returns a SeqInfo object.
btrack1 <- BlockTrack(GRanges("chr1", IRanges(1, 123))) btrack2 <- BlockTrack(GRanges("chr2", IRanges(3, 599))) ctrack <- merge(btrack1, btrack2)#> Warning: The 2 combined objects have no sequence levels in common. (Use #> suppressWarnings() to suppress this warning.)#> Seqinfo object with 1 sequence from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr1 NA NA <NA>seqinfo(btrack2)#> Seqinfo object with 1 sequence from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr2 NA NA <NA>seqinfo(ctrack)#> Seqinfo object with 2 sequences from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr1 NA NA <NA> #> chr2 NA NA <NA>seqinfo(board)#> Warning: The 2 combined objects have no sequence levels in common. (Use #> suppressWarnings() to suppress this warning.)#> Seqinfo object with 2 sequences from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr1 NA NA <NA> #> chr2 NA NA <NA>