Seqinfo of TnTTrack and TnTBoard

# S4 method for RangeBasedTrack
seqinfo(x, new2old = NULL,
  pruning.mode = c("error", "coarse", "fine", "tidy")) <- value

# S4 method for RangeBasedTrack
seqinfo(x)

# S4 method for RangeBasedTrack
seqlevelsInUse(x)

# S4 method for TnTBoard
seqinfo(x)

# S4 method for CompositeTrack
seqinfo(x)

# S4 method for CompositeTrack
seqinfo(x, new2old = NULL,
  pruning.mode = c("error", "coarse", "fine", "tidy")) <- value

# S4 method for CompositeTrack
seqlevelsInUse(x)

Arguments

x

A TnTTrack or TnTBoard object.

new2old, pruning.mode, value

Passed to seqinfo method for GenomicRanges.

Value

seqinfo returns a SeqInfo object.

Examples

btrack1 <- BlockTrack(GRanges("chr1", IRanges(1, 123))) btrack2 <- BlockTrack(GRanges("chr2", IRanges(3, 599))) ctrack <- merge(btrack1, btrack2)
#> Warning: The 2 combined objects have no sequence levels in common. (Use #> suppressWarnings() to suppress this warning.)
board <- TnTBoard(list(btrack1, btrack2)) seqinfo(btrack1)
#> Seqinfo object with 1 sequence from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr1 NA NA <NA>
seqinfo(btrack2)
#> Seqinfo object with 1 sequence from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr2 NA NA <NA>
seqinfo(ctrack)
#> Seqinfo object with 2 sequences from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr1 NA NA <NA> #> chr2 NA NA <NA>
seqinfo(board)
#> Warning: The 2 combined objects have no sequence levels in common. (Use #> suppressWarnings() to suppress this warning.)
#> Seqinfo object with 2 sequences from an unspecified genome; no seqlengths: #> seqnames seqlengths isCircular genome #> chr1 NA NA <NA> #> chr2 NA NA <NA>