Tracks

Track constructors and accessors.

BlockTrack() VlineTrack() PinTrack() LineTrack() AreaTrack() GeneTrackFromTxDb() FeatureTrack() GroupFeatureTrack() TxTrackFromTxDb() TxTrackFromGRanges()

Track Constructors

merge(<TnTTrack>,<TnTTrack>) merge(<TnTTrack>,<missing>)

Composite Track

tooltip() `tooltip<-`()

Access Track Tooltips

trackData() `trackData<-`() `$`(<TnTTrack>) `$<-`(<TnTTrack>)

Access Track Data

trackSpec() `trackSpec<-`()

Track Spec

range(<RangeBasedTrack>) range(<CompositeTrack>)

Range of Tracks

`seqinfo<-`(<RangeBasedTrack>) seqinfo(<RangeBasedTrack>) seqlevelsInUse(<RangeBasedTrack>) seqinfo(<TnTBoard>) seqinfo(<CompositeTrack>) `seqinfo<-`(<CompositeTrack>) seqlevelsInUse(<CompositeTrack>)

Seqinfo of TnTTrack and TnTBoard

TnT Board

TnT Board and TnT Genome.

TnTBoard() TnTGenome()

TnTBoard

tracklist() `tracklist<-`()

Track List in TnTBoard

knit_print(<TnTBoard>)

Printing TnTBoard in Rmarkdown

range(<TnTBoard>)

Range of TnTBoard

TnTOutput() renderTnT()

Shiny bindings for TnT

Utils

Some small util functions.

saveTnT()

Save a TnTBoard to an HTML file

mapcol()

Scale Qualitative Values to Color

strandlabel()

Display Labels with Strand

trackWidget()

Convert a TnTBoard to htmlwidget